MUSTA | MUtation and Somatic Tumor Analysis

Provides an overview of Musta and introduces the purpose of the user guide.

Guides users on the initial steps, including system requirements, downloading Musta, installation instructions, and verifying the installation.

Explains how to set up input data, including organizing sample data and supported data formats. Provides guidance on configuring the Musta CLI and customizing variant calling and annotation. Discusses the use of configuration files.

It explains how to detect somatic mutations in cancer samples, which variant callers are available, and how to customize the detection process.

Users learn how to annotate somatic mutations and understand the significance of functional annotations. It also covers using different variant annotators.

It covers driver gene identification, pathway analysis, mutational signatures, and somatic interactions. users can learn how to make sense of the detected mutations.